Select the view in question, then uncheck the button shown below, then add the automatic centerlines, then reselect the view, select the button shown below again, and done. I think that's what you were wanting to do.
ST9 Windows 7 Professional Nvidia K2200 & Intel Xeon "You're doing it wrong"
I would also like to see enhancements to automatic center lines, but for a different reason. Auto only has one setting, everything. I frequently only want center line for 10% of the visible circles but do want the lines that connect between center. Sometimes I draw in view, sometimes I use auto and delete what is unwanted.
This is another case where you should be able to specify the desired results easier.